论文标题

哪个像素要注释:标签效率的核分割框架

Which Pixel to Annotate: a Label-Efficient Nuclei Segmentation Framework

论文作者

Lou, Wei, Li, Haofeng, Li, Guanbin, Han, Xiaoguang, Wan, Xiang

论文摘要

最近,需要大量注释样品的深神经网络已被广泛应用于H \&E染色病理图像的核实例分割。但是,将所有像素的核图像数据集标记为通常包含相似和冗余模式的核图像数据集是效率低下的。尽管已经研究了无监督和半监督的学习方法进行核分割,但很少有作品深入研究样品的选择性标记,以减少注释的工作量。因此,在本文中,我们提出了一个新型的完整核分割框架,该框架仅选择要注释的几个图像贴片,增强从选定样品中的训练集,并以半措辞的方式实现核分割。在拟议的框架中,我们首先开发了一种基于一致性的斑块选择方法,以确定哪些图像贴片对训练最有益。然后,我们引入了一个有条件的单位图像gan,其中包括组成部分的歧视器,以合成更多的训练样本。最后,我们提出的框架通过上述增强样品训练现有的分割模型。实验结果表明,我们提出的方法可以通过在某些基准上注释小于5%的像素来获得与完全监督基线相同的性能。

Recently deep neural networks, which require a large amount of annotated samples, have been widely applied in nuclei instance segmentation of H\&E stained pathology images. However, it is inefficient and unnecessary to label all pixels for a dataset of nuclei images which usually contain similar and redundant patterns. Although unsupervised and semi-supervised learning methods have been studied for nuclei segmentation, very few works have delved into the selective labeling of samples to reduce the workload of annotation. Thus, in this paper, we propose a novel full nuclei segmentation framework that chooses only a few image patches to be annotated, augments the training set from the selected samples, and achieves nuclei segmentation in a semi-supervised manner. In the proposed framework, we first develop a novel consistency-based patch selection method to determine which image patches are the most beneficial to the training. Then we introduce a conditional single-image GAN with a component-wise discriminator, to synthesize more training samples. Lastly, our proposed framework trains an existing segmentation model with the above augmented samples. The experimental results show that our proposed method could obtain the same-level performance as a fully-supervised baseline by annotating less than 5% pixels on some benchmarks.

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