论文标题

机器学习以预测冷大气血浆激活液体的抗菌活性

Machine Learning to Predict the Antimicrobial Activity of Cold Atmospheric Plasma-Activated Liquids

论文作者

Ozdemir, Mehmet Akif, Ozdemir, Gizem Dilara, Gul, Merve, Guren, Onan, Ercan, Utku Kursat

论文摘要

血浆定义为物质的第四个状态,在高电场下可以在大气压下产生非热血浆。现在众所周知,血浆激活液体(PAL)的强和广谱抗菌作用。机器学习(ML)在医学领域的可靠适用性也鼓励其在等离子体医学领域的应用。因此,在PALS上的ML应用可以提出一种新的观点,以更好地了解各种参数对其抗菌作用的影响。在本文中,通过使用先前获得的数据来定性预测PAL的体外抗菌活性,从而介绍了比较监督的ML模型。进行了文献搜索,并从33个相关文章中收集数据。在所需的预处理步骤之后,将两种监督的ML方法(即分类和回归)应用于数据以获得微生物失活(MI)预测。对于分类,MI被标记为四个类别,而对于回归,MI被用作连续变量。为分类和回归模型进行了两种强大的跨验验策略,以评估所提出的方法。重复分层的K折交叉验证和K折交叉验证。我们还研究了不同特征对模型的影响。结果表明,高参数优化的随机森林分类器(ORFC)和随机森林回归者(ORFR)分别比其他模型分别提供了更好的结果。最后,获得ORFC的最佳测试精度为82.68%,ORFR的R2为0.75。 ML技术可能有助于更好地理解在所需的抗菌作用中具有主要作用的等离子体参数。此外,这种发现可能有助于将来的血浆剂量定义。

Plasma is defined as the fourth state of matter and non-thermal plasma can be produced at atmospheric pressure under a high electrical field. The strong and broad-spectrum antimicrobial effect of plasma-activated liquids (PALs) is now well known. The proven applicability of machine learning (ML) in the medical field is encouraging for its application in the field of plasma medicine as well. Thus, ML applications on PALs could present a new perspective to better understand the influences of various parameters on their antimicrobial effects. In this paper, comparative supervised ML models are presented by using previously obtained data to qualitatively predict the in vitro antimicrobial activity of PALs. A literature search was performed and data is collected from 33 relevant articles. After the required preprocessing steps, two supervised ML methods, namely classification, and regression are applied to data to obtain microbial inactivation (MI) predictions. For classification, MI is labeled in four categories and for regression, MI is used as a continuous variable. Two different robust cross-validation strategies are conducted for classification and regression models to evaluate the proposed method; repeated stratified k-fold cross-validation and k-fold cross-validation, respectively. We also investigate the effect of different features on models. The results demonstrated that the hyperparameter-optimized Random Forest Classifier (oRFC) and Random Forest Regressor (oRFR) provided better results than other models for the classification and regression, respectively. Finally, the best test accuracy of 82.68% for oRFC and R2 of 0.75 for the oRFR are obtained. ML techniques could contribute to a better understanding of plasma parameters that have a dominant role in the desired antimicrobial effect. Furthermore, such findings may contribute to the definition of a plasma dose in the future.

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