论文标题
假单胞菌荧光生物膜的流变学:从实验到DPD介质建模
Rheology of Pseudomonas fluorescens biofilms: from experiments to DPD mesoscopic modelling
论文作者
论文摘要
在临床和工业环境中,细菌生物膜的存在是全球一个主要问题。生物膜是一种粘弹性基质,由细菌产生细菌交联的细胞外聚合物(EPS)网络组成。复杂生物膜的建模与提供准确的描述和预测有关,这些描述和预测包括水动力学,细菌群体的动力学和溶质质量转运。但是,即使在粗粒度的水平上,最新的数值建模也不令人满意。在这项工作中,我们提出了细菌生物膜的数值粗粒模型,该模型由浸入聚合物网络水性基质中的细菌组成,该模型允许研究生物膜的流变特性。 We study its viscoelastic modulus, varying topology and composition (such as the number of crosslinks between EPS polymers, the number of bacteria and the amount of solvent), and compare the numerical results with experimental rheological data of Pseudomonas fluorescens biofilms grown under static and shaking conditions, as previously described by Jara et al, Frontiers in Microbiology (2021).
The presence of bacterial biofilms in clinical and industrial settings is a major issue worldwide. A biofilm is a viscoelastic matrix, composed of bacteria producing a network of Extracellular Polymeric Substances (EPS) to which bacteria crosslink. Modelling of complex biofilms is relevant to provide accurate descriptions and predictions that include parameters as hydrodynamics, dynamics of the bacterial population and solute mass transport. However, up-to-date numerical modelling, even at a coarse-grained level, is not satisfactorily. In this work, we present a numerical coarse-grain model of a bacterial biofilm, consisting of bacteria immersed in an aqueous matrix of a polymer network, that allows to study rheological properties of a biofilm. We study its viscoelastic modulus, varying topology and composition (such as the number of crosslinks between EPS polymers, the number of bacteria and the amount of solvent), and compare the numerical results with experimental rheological data of Pseudomonas fluorescens biofilms grown under static and shaking conditions, as previously described by Jara et al, Frontiers in Microbiology (2021).