论文标题

人类端粒G-四链体的连接结构,构象和能量学

Connecting Structure, Conformation and Energetics of Human Telomere G-quadruplex Multimers

论文作者

Rosi, Benedetta Petra, Libera, Valeria, Orecchini, Andrea, Corezzi, Silvia, Schirò, Giorgio, Pernot, Petra, Petrillo, Caterina, Comez, Lucia, De Michele, Cristiano, Paciaroni, Alessandro

论文摘要

G-四链体(G4S)是由富含鸟嘌呤的核酸序列形成的螺旋四链结构,被认为在癌症发展和恶性转化中起作用。当前的大多数研究都集中在G4单体上,但在适当且与生物学相关的条件下,G4会经历多聚化。在这里,我们解决了人端粒序列在解决方案中形成的G4多聚体的结构,构象和能量特征。使用一种新型的多技术方法,结合了小角度X射线散射(SAXS)和圆形二色性实验与粗粒模拟,以提供有关大规模结构特征和G4多聚体稳定性的定量信息。后者显示出明显的多分散性,以及轮廓长度的指数分布,表明阶梯生长聚合。在增加DNA浓度时,G4堆叠相互作用的强度增加,以及聚集体中的单元数量,二聚体和三聚体是最可能的形式。同时,观察到G4构象的变化。我们的发现提供了人类端粒G4多聚体的定量图片,必须考虑这一点,以实现针对DNA结构的抗癌药物的合理设计。

G-quadruplexes (G4s) are helical four-stranded structures forming from guanine-rich nucleic acid sequences, which are thought to play a role in cancer development and malignant transformation. Most current studies focus on G4 monomers, yet under suitable and biologically relevant conditions G4s undergo multimerization. Here, we address the structural, conformational and energetic features of G4 multimers formed in solutions by the human telomere sequence. A novel multi-technique approach is used combining Small Angle X-ray Scattering (SAXS) and circular dichroism experiments with coarse-grained simulations, to provide quantitative information about large-scale structural features and the stability of G4 multimers. The latter show a significant polydispersity with an exponential distribution of contour lengths, suggesting a step-growth polymerization. On increasing DNA concentration, the strength of G4 stacking interaction increases, as well as the number of the units in the aggregates, with dimers and trimers as the most probable forms. At the same time, a variation of G4 conformation is observed. Our findings provide a quantitative picture of human telomere G4 multimers, which must be accounted for to achieve a rational design of anticancer drugs targeting DNA structures.

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