论文标题
一种基于肺组织鉴定的新型无监督的肺部病变分割
A novel unsupervised covid lung lesion segmentation based on the lung tissue identification
论文作者
论文摘要
这项研究旨在评估一种新型无监督的基于深度学习的框架,用于从COVID患者的CT图像中进行自动感染病变细分。第一步,对两个残留网络进行了独立训练,以识别正常患者的肺组织,并以监督的方式识别肺组织。这两个模型,分别为Covid-19和正常患者的DL-Covid和DL-norm,分别为肺组织鉴定生成体素的概率图。为了检测共同病变,DL-Covid和DL-Norm模型处理了Covid患者的CT图像,以获得两个肺概率图。由于DL-NORM模型不熟悉肺中的共vid感染,因此该模型将比DL-COVID分配较低的病变概率。因此,可以通过从DL-COVID和DL-NORM模型获得的两个肺概率图的减法来产生共证感染的概率图。使用50个COVID-19 CT图像的手动病变分割用于评估无监督病变分割方法的准确性。在外部验证数据集中,正常患者的肺部分割肺部分割达到了0.985和0.978的骰子系数。通过提出的无监督方法对感染分割的定量结果分别显示骰子系数和Jaccard指数分别为0.67和0.60。对COVID-19传染性病变分割的提议的无监督方法的定量评估显示出相对令人满意的结果。由于此框架不需要任何带注释的数据集,因此可以用于生成非常大的培训样本,用于专门针对嘈杂和/或弱注释数据集的监督机器学习算法。
This study aimed to evaluate the performance of a novel unsupervised deep learning-based framework for automated infections lesion segmentation from CT images of Covid patients. In the first step, two residual networks were independently trained to identify the lung tissue for normal and Covid patients in a supervised manner. These two models, referred to as DL-Covid and DL-Norm for Covid-19 and normal patients, respectively, generate the voxel-wise probability maps for lung tissue identification. To detect Covid lesions, the CT image of the Covid patient is processed by the DL-Covid and DL-Norm models to obtain two lung probability maps. Since the DL-Norm model is not familiar with Covid infections within the lung, this model would assign lower probabilities to the lesions than the DL-Covid. Hence, the probability maps of the Covid infections could be generated through the subtraction of the two lung probability maps obtained from the DL-Covid and DL-Norm models. Manual lesion segmentation of 50 Covid-19 CT images was used to assess the accuracy of the unsupervised lesion segmentation approach. The Dice coefficients of 0.985 and 0.978 were achieved for the lung segmentation of normal and Covid patients in the external validation dataset, respectively. Quantitative results of infection segmentation by the proposed unsupervised method showed the Dice coefficient and Jaccard index of 0.67 and 0.60, respectively. Quantitative evaluation of the proposed unsupervised approach for Covid-19 infectious lesion segmentation showed relatively satisfactory results. Since this framework does not require any annotated dataset, it could be used to generate very large training samples for the supervised machine learning algorithms dedicated to noisy and/or weakly annotated datasets.