论文标题

Whocares:数据驱动的全脑心脏信号回归,来自高度加速的多型fMRI获取

WHOCARES: data-driven WHOle-brain CArdiac signal REgression from highly accelerated simultaneous multi-Slice fMRI acquisitions

论文作者

Colenbier, Nigel, Marino, Marco, Arcara, Giorgio, Frederick, Blaise, Pellegrino, Giovanni, Marinazzo, Daniele, Ferrazzi, Giulio

论文摘要

心脏脉动是功能磁共振成像(fMRI)时间序列的生理混杂,它引入了与血管接近的杂散信号波动。单独的fMRI不足以解决心脏搏动。取决于瞬时心率与采集采样频率之间的比率(1/tr,TR为重复时间),心脏信号可能会使神经激活的频率带入。同时的多块(SMS)成像的引入显着降低了心脏异叠的机会。但是,以高空间分辨率覆盖整个大脑的必要性将最短的TR限制在0.5秒以上,这反过来又不足够短,无法将心脏脉动的解决超过每分钟60次。最近,引入了fMRI时间序列的超采样,以克服此问题。每秒钟一次对每个解剖位置进行采样,但连续激发之间的时间较短,因此足以解决心脏脉动。在这项研究中,我们表明,通过将专用的高采样分解方案与SMS相结合,在时间和空间上可以在每个体素位置解决心脏波形。我们开发了从人类连接项目(HCP)中选择的774名健康受试者的技术,并针对Retroicor方法验证了该技术。提出的方法,我们将数据驱动的全脑心脏信号回归命名为高度加速的多块fMRI获取(Whocares)是完全数据驱动的,这并不能使对心脏脉动的特定假设对fmri数据的回顾性校正不可行,因此对心脏脉动的特定假设并不独立。 Whocares可以在https://github.com/gferrazzi/whocares上免费获得。

Cardiac pulsation is a physiological confound of functional magnetic resonance imaging (fMRI) time-series that introduces spurious signal fluctuations in proximity to blood vessels. fMRI alone is not sufficiently fast to resolve cardiac pulsation. Depending on the ratio between the instantaneous heart-rate and the acquisition sampling frequency (1/TR, with TR being the repetition time), the cardiac signal may alias into the frequency band of neural activation. The introduction of simultaneous multi-slice (SMS) imaging has significantly reduced the chances of cardiac aliasing. However, the necessity of covering the entire brain at high spatial resolution restrain the shortest TR to just over 0.5 seconds, which is in turn not sufficiently short to resolve cardiac pulsation beyond 60 beats per minute. Recently, hyper-sampling of the fMRI time-series has been introduced to overcome this issue. While each anatomical location is sampled every TR seconds, the time between consecutive excitations is shorter and thus adequate to resolve cardiac pulsation. In this study, we show that it is feasible to temporally and spatially resolve cardiac waveforms at each voxel location by combining a dedicated hyper-sampling decomposition scheme with SMS. We developed the technique on 774 healthy subjects selected from the Human Connectome Project (HCP) and validated the technology against the RETROICOR method. The proposed approach, which we name Data-driven WHOle-brain CArdiac signal REgression from highly accelerated simultaneous multi-Slice fMRI acquisitions (WHOCARES), is fully data-driven, does not make specific assumptions on cardiac pulsatility, and is independent from external physiological recordings so that the retrospective correction of fMRI data becomes possible when such measurements are not available. WHOCARES is freely available at https://github.com/gferrazzi/WHOCARES.

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