论文标题

3D断层扫描模式合成,用于增强COVID-19的定量

3D Tomographic Pattern Synthesis for Enhancing the Quantification of COVID-19

论文作者

Liu, Siqi, Georgescu, Bogdan, Xu, Zhoubing, Yoo, Youngjin, Chabin, Guillaume, Chaganti, Shikha, Grbic, Sasa, Piat, Sebastian, Teixeira, Brian, Balachandran, Abishek, RS, Vishwanath, Re, Thomas, Comaniciu, Dorin

论文摘要

冠状病毒疾病(Covid-19)影响了180万人,截至2020年4月12日,已有11万多人死亡。几项研究表明,在胸部计算机断层扫描(CT)上看到的层析成像模式,例如地面玻璃玻璃的不透明,整合,固结和疯狂的铺路模式与疾病的严重性和进展相关。因此,CT成像可以作为Covid-19患者管理的重要方式。基于AI的解决方案可用于支持基于CT的定量报告,并可以自动计算定量生物标志物(例如不透明度(PO)的百分比),使阅读有效且可再现。但是,Covid-19对AI的开发提出了独特的挑战,特别是关于适当的图像数据和大规模注释的可用性。在本文中,我们建议使用合成数据集来增强现有的COVID-19数据库来应对这些挑战。我们训练生成的对抗网络(GAN),以从没有传染病的患者的胸部CTS上进行paint covid-19的paint covid模式。此外,我们利用手动标记的Covid-19胸部CTS患者得出的位置先验,以产生适当的异常分布。合成数据用于通过将20%的合成数据添加到实际的Covid-19训练数据中来改善COVID-19模式的肺部分割和分割。我们收集了2143个胸部CT,其中包含327个Covid-19-19个阳性病例,这些病例是从7个国家 /地区的12个地点获得的。通过对100个Covid-19-19阳性和100个对照病例进行测试,我们表明合成数据可以帮助改善肺部分割(+6.02%的病变纳入率)和异常分割(+2.78%的骰子系数),从而导致整体上更准确的PO计算(+2.82%Pearson系数)。

The Coronavirus Disease (COVID-19) has affected 1.8 million people and resulted in more than 110,000 deaths as of April 12, 2020. Several studies have shown that tomographic patterns seen on chest Computed Tomography (CT), such as ground-glass opacities, consolidations, and crazy paving pattern, are correlated with the disease severity and progression. CT imaging can thus emerge as an important modality for the management of COVID-19 patients. AI-based solutions can be used to support CT based quantitative reporting and make reading efficient and reproducible if quantitative biomarkers, such as the Percentage of Opacity (PO), can be automatically computed. However, COVID-19 has posed unique challenges to the development of AI, specifically concerning the availability of appropriate image data and annotations at scale. In this paper, we propose to use synthetic datasets to augment an existing COVID-19 database to tackle these challenges. We train a Generative Adversarial Network (GAN) to inpaint COVID-19 related tomographic patterns on chest CTs from patients without infectious diseases. Additionally, we leverage location priors derived from manually labeled COVID-19 chest CTs patients to generate appropriate abnormality distributions. Synthetic data are used to improve both lung segmentation and segmentation of COVID-19 patterns by adding 20% of synthetic data to the real COVID-19 training data. We collected 2143 chest CTs, containing 327 COVID-19 positive cases, acquired from 12 sites across 7 countries. By testing on 100 COVID-19 positive and 100 control cases, we show that synthetic data can help improve both lung segmentation (+6.02% lesion inclusion rate) and abnormality segmentation (+2.78% dice coefficient), leading to an overall more accurate PO computation (+2.82% Pearson coefficient).

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源