论文标题
恒定压力下的杂交粒子场分子动力学
Hybrid Particle-Field Molecular Dynamics Under Constant Pressure
论文作者
论文摘要
混合粒子场方法是用于建模软物质系统的计算有效方法。到目前为止,这些方法的应用仅限于恒定体积条件。在这里,我们重新制定了粒子场相互作用,以表示耦合到恒定外部压力的系统。首先,我们表明可以修改常用的粒子场能量功能,以对压力张量的各向同性贡献进行建模和参数化,而不会干扰颗粒上的显微力。其次,我们采用平方梯度颗粒场相互作用项来模拟对压力张量的非异向贡献,例如表面张力现象。该公式是在混合粒子场分子动力学方法中实现的,并在一系列模型系统上进行了测试。均质水箱的模拟表明,可以参数化状态方程,以重现给定外部压力的任何目标密度。此外,相同的参数化可以转移到相似的粗粒映射分辨率的系统中。最后,我们评估了拟议方法对磷脂的粗粒粒模型的可行性,发现单独的水与脂质烃之间的项足以在恒定压力模拟中复制每个脂质的实验区域,并且可以产生定性正确正确的横向压力。
Hybrid particle-field methods are computationally efficient approaches for modelling soft matter systems. So far applications of these methodologies have been limited to constant volume conditions. Here, we reformulate particle-field interactions to represent systems coupled to constant external pressure. First, we show that the commonly used particle-field energy functional can be modified to model and parameterize the isotropic contributions to the pressure tensor without interfering with the microscopic forces on the particles. Second, we employ a square gradient particle-field interaction term to model non-isotropic contributions to the pressure tensor, such as in surface tension phenomena. This formulation is implemented within the hybrid particle-field molecular dynamics approach and is tested on a series of model systems. Simulations of a homogeneous water box demonstrate that it is possible to parameterize the equation of state to reproduce any target density for a given external pressure. Moreover, the same parameterization is transferable to systems of similar coarse-grained mapping resolution. Finally, we evaluate the feasibility of the proposed approach on coarse-grained models of phospholipids, finding that the term between water and the lipid hydrocarbon tails is alone sufficient to reproduce the experimental area per lipid in constant-pressure simulations, and to produce a qualitatively correct lateral pressure profile.